Assembly
ASM5225103v1
BioProject PRJNA1294857 · BioSample SAMN50128752
GENOME-RESOLVED EVIDENCE
GCA_052251035.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3479025 bp · GC 28.500%
Completeness 97.210% · contamination 7.660%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEP_08520 | XZI84786.1 | OG0000061 | CP198887.1:1790493–1791845 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEP_14650 | XZI85970.1 | OG0000131 | CP198887.1:3204312–3205265 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEP_08530 | XZI84788.1 | OG0000212 | CP198887.1:1792279–1792770 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEP_02020 | XZI86478.1 | OG0000229 | CP198887.1:392634–393482 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEP_02700 | XZI86586.1 | OG0000234 | CP198887.1:518908–520086 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEP_08525 | XZI84787.1 | OG0000785 | CP198887.1:1791857–1792276 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEP_00715 | XZI86249.1 | OG0001124 | CP198887.1:133803–136400 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEP_13585 | XZI85772.1 | OG0001228 | CP198887.1:2955601–2957124 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXEP_08570 | XZI84795.1 | OG0001328 | CP198887.1:1798839–1799414 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXEP_02000 | XZI86474.1 | OG0001394 | CP198887.1:388726–389508 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEP_14720 | XZI85984.1 | OG0001639 | CP198887.1:3220266–3221042 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.