Assembly
ASM5225104v1
BioProject PRJNA1294857 · BioSample SAMN50128751
GENOME-RESOLVED EVIDENCE
GCA_052251045.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3445437 bp · GC 28.500%
Completeness 97.210% · contamination 7.660%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEO_06975 | XZI90595.1 | OG0000061 | CP198863.1:1591443–1592795 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEO_00830 | XZI89411.1 | OG0000131 | CP198863.1:178023–178976 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEO_06965 | XZI90593.1 | OG0000212 | CP198863.1:1590518–1591009 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEO_13470 | XZI88921.1 | OG0000229 | CP198863.1:2989806–2990654 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEO_12790 | XZI88813.1 | OG0000234 | CP198863.1:2863202–2864380 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEO_06970 | XZI90594.1 | OG0000785 | CP198863.1:1591012–1591431 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEO_14775 | XZI89150.1 | OG0001124 | CP198863.1:3246888–3249485 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEO_01905 | XZI89612.1 | OG0001228 | CP198863.1:426164–427687 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXEO_06925 | XZI90586.1 | OG0001328 | CP198863.1:1583874–1584449 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXEO_13490 | XZI88925.1 | OG0001394 | CP198863.1:2993780–2994562 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEO_00760 | XZI89397.1 | OG0001639 | CP198863.1:162246–163022 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.