Assembly
ASM5225105v1
BioProject PRJNA1294857 · BioSample SAMN50128746
GENOME-RESOLVED EVIDENCE
GCA_052251055.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4137592 bp · GC 28.000%
Completeness 95.540% · contamination 16.260%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEJ_08650 | XZI90961.1 | OG0000061 | CP198838.1:1802833–1804185 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEJ_14550 | XZI92089.1 | OG0000131 | CP198838.1:3162007–3162960 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEJ_08660 | XZI90963.1 | OG0000212 | CP198838.1:1804619–1805110 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| accBACSXEJ_18025 | XZI94278.1 | OG0000212 | CP198844.1:57523–58014 - | acetyl-CoA carboxylase biotin carboxyl carrier protein (plasmid) [Clostridium perfringens] |
| hbdACSXEJ_02160 | XZI92584.1 | OG0000229 | CP198838.1:412682–413530 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEJ_02870 | XZI92699.1 | OG0000234 | CP198838.1:542144–543322 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEJ_08655 | XZI90962.1 | OG0000785 | CP198838.1:1804197–1804616 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| fabZACSXEJ_18020 | XZI94277.1 | OG0000785 | CP198844.1:57101–57520 - | 3-hydroxyacyl-ACP dehydratase FabZ (plasmid) [Clostridium perfringens] |
| adhEACSXEJ_00780 | XZI92339.1 | OG0001124 | CP198838.1:144335–146932 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXEJ_02140 | XZI92580.1 | OG0001394 | CP198838.1:408773–409555 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEJ_14590 | XZI92097.1 | OG0001639 | CP198838.1:3172838–3173614 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| accCACSXEJ_18015 | XZI94276.1 | Unmapped | CP198844.1:55737–57089 - | acetyl-CoA carboxylase biotin carboxylase subunit (plasmid) [Clostridium perfringens] |
| crtACSXEJ_18685 | XZI94408.1 | Unmapped | CP198847.1:35719–36501 + | short-chain-enoyl-CoA hydratase (plasmid) [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.