Assembly
ASM5225109v1
BioProject PRJNA1294857 · BioSample SAMN50128739
GENOME-RESOLVED EVIDENCE
GCA_052251095.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3517141 bp · GC 28.000%
Completeness 97.300% · contamination 4.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEC_08340 | XZI97624.1 | OG0000061 | CP198828.1:1756481–1757833 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEC_14640 | XZI98828.1 | OG0000131 | CP198828.1:3203357–3204310 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEC_08350 | XZI97626.1 | OG0000212 | CP198828.1:1758267–1758758 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEC_02090 | XZI99342.1 | OG0000229 | CP198828.1:407254–408102 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEC_02795 | XZI99455.1 | OG0000234 | CP198828.1:538311–539489 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEC_08345 | XZI97625.1 | OG0000785 | CP198828.1:1757845–1758264 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEC_00785 | XZI99113.1 | OG0001124 | CP198828.1:146160–148757 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEC_13525 | XZI98620.1 | OG0001228 | CP198828.1:2944850–2946373 - | L-lactate permease [Clostridium perfringens] |
| crtACSXEC_02070 | XZI99338.1 | OG0001394 | CP198828.1:403345–404127 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEC_14895 | XZI98876.1 | OG0001639 | CP198828.1:3253946–3254722 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.