Assembly
ASM5225152v1
BioProject PRJNA1294857 · BioSample SAMN50128721
GENOME-RESOLVED EVIDENCE
GCA_052251525.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3300167 bp · GC 28.500%
Completeness 96.350% · contamination 2.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDU_09080 | XZJ00978.1 | OG0000061 | CP198753.1:2010612–2011964 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDU_03170 | XZJ02616.1 | OG0000131 | CP198753.1:629263–630216 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDU_09070 | XZJ00976.1 | OG0000212 | CP198753.1:2009687–2010178 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDU_00430 | XZJ02146.1 | OG0000229 | CP198753.1:71414–72262 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDU_14490 | XZJ02013.1 | OG0000234 | CP198753.1:3209136–3210314 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDU_09075 | XZJ00977.1 | OG0000785 | CP198753.1:2010181–2010600 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDU_01730 | XZJ02375.1 | OG0001124 | CP198753.1:329468–332065 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDU_04285 | XZJ02823.1 | OG0001228 | CP198753.1:885725–887248 + | L-lactate permease [Clostridium perfringens] |
| crtACSXDU_00450 | XZJ02150.1 | OG0001394 | CP198753.1:75389–76171 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDU_03130 | XZJ02608.1 | OG0001639 | CP198753.1:618615–619391 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.