Assembly
ASM5225161v1
BioProject PRJNA1294857 · BioSample SAMN50128727
GENOME-RESOLVED EVIDENCE
GCA_052251615.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3637799 bp · GC 28.500%
Completeness 98.600% · contamination 6.970%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD0_11975 | XZJ04261.1 | OG0000061 | CP198746.1:2568201–2569553 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD0_02145 | XZJ05393.1 | OG0000131 | CP198746.1:438338–439291 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD0_11985 | XZJ04263.1 | OG0000212 | CP198746.1:2569987–2570478 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD0_05375 | XZJ06008.1 | OG0000229 | CP198746.1:1152718–1153566 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD0_06085 | XZJ06123.1 | OG0000234 | CP198746.1:1283381–1284559 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD0_11980 | XZJ04262.1 | OG0000785 | CP198746.1:2569565–2569984 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD0_00805 | XZJ05165.1 | OG0001124 | CP198746.1:159306–161903 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD0_03330 | XZJ05616.1 | OG0001228 | CP198746.1:709878–711401 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD0_05355 | XZJ06004.1 | OG0001394 | CP198746.1:1148809–1149591 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD0_02105 | XZJ05385.1 | OG0001639 | CP198746.1:427672–428448 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.