Assembly
ASM5225168v1
BioProject PRJNA1294857 · BioSample SAMN50128728
GENOME-RESOLVED EVIDENCE
GCA_052251685.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3361725 bp · GC 28.500%
Completeness 97.390% · contamination 4.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD1_06810 | XZJ09497.1 | OG0000061 | CP198743.1:1540254–1541606 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD1_00670 | XZJ08317.1 | OG0000131 | CP198743.1:151626–152579 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD1_06800 | XZJ09495.1 | OG0000212 | CP198743.1:1539329–1539820 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD1_13005 | XZJ07828.1 | OG0000229 | CP198743.1:2875546–2876394 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD1_12400 | XZJ07734.1 | OG0000234 | CP198743.1:2758211–2759389 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD1_06805 | XZJ09496.1 | OG0000785 | CP198743.1:1539823–1540242 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD1_14305 | XZJ08058.1 | OG0001124 | CP198743.1:3132700–3135297 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD1_01695 | XZJ08506.1 | OG0001228 | CP198743.1:388635–390158 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD1_13025 | XZJ07832.1 | OG0001394 | CP198743.1:2879521–2880303 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD1_00630 | XZJ08309.1 | OG0001639 | CP198743.1:140972–141748 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.