Assembly
ASM5225175v1
BioProject PRJNA1294857 · BioSample SAMN50128718
GENOME-RESOLVED EVIDENCE
GCA_052251755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3417758 bp · GC 28.500%
Completeness 97.080% · contamination 4.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDR_06520 | XZJ12309.1 | OG0000061 | CP198763.1:1429138–1430490 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDR_12560 | XZJ10675.1 | OG0000131 | CP198763.1:2817386–2818339 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDR_06530 | XZJ12311.1 | OG0000212 | CP198763.1:1430924–1431415 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDR_00350 | XZJ11147.1 | OG0000229 | CP198763.1:74073–74921 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDR_01060 | XZJ11261.1 | OG0000234 | CP198763.1:208221–209399 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDR_06525 | XZJ12310.1 | OG0000785 | CP198763.1:1430502–1430921 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDR_14020 | XZJ10918.1 | OG0001124 | CP198763.1:3114118–3116715 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDR_11465 | XZJ10470.1 | OG0001228 | CP198763.1:2563428–2564951 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDR_00330 | XZJ11143.1 | OG0001394 | CP198763.1:70164–70946 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDR_12600 | XZJ10683.1 | OG0001639 | CP198763.1:2828195–2828971 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.