Assembly
ASM5225192v1
BioProject PRJNA1294857 · BioSample SAMN50128722
GENOME-RESOLVED EVIDENCE
GCA_052251925.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3350668 bp · GC 28.500%
Completeness 97.700% · contamination 3.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDV_07005 | XZJ15630.1 | OG0000061 | CP198752.1:1585122–1586474 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDV_00675 | XZJ14408.1 | OG0000131 | CP198752.1:152828–153781 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDV_06995 | XZJ15628.1 | OG0000212 | CP198752.1:1584197–1584688 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDV_13255 | XZJ13933.1 | OG0000229 | CP198752.1:2946164–2947012 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDV_12515 | XZJ13813.1 | OG0000234 | CP198752.1:2811630–2812808 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDV_07000 | XZJ15629.1 | OG0000785 | CP198752.1:1584691–1585110 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDV_14545 | XZJ14162.1 | OG0001124 | CP198752.1:3203522–3206119 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDV_01805 | XZJ14619.1 | OG0001228 | CP198752.1:418390–419913 + | L-lactate permease [Clostridium perfringens] |
| crtACSXDV_13275 | XZJ13937.1 | OG0001394 | CP198752.1:2950139–2950921 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDV_00635 | XZJ14400.1 | OG0001639 | CP198752.1:142161–142937 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.