Assembly
ASM5225193v1
BioProject PRJNA1294857 · BioSample SAMN50128714
GENOME-RESOLVED EVIDENCE
GCA_052251935.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3417757 bp · GC 28.500%
Completeness 97.080% · contamination 4.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDN_08275 | XZJ15858.1 | OG0000061 | CP198621.1:1759882–1761234 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDN_14305 | XZJ17021.1 | OG0000131 | CP198621.1:3148130–3149083 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDN_08285 | XZJ15860.1 | OG0000212 | CP198621.1:1761668–1762159 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDN_02100 | XZJ17494.1 | OG0000229 | CP198621.1:404818–405666 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDN_02810 | XZJ17608.1 | OG0000234 | CP198621.1:538966–540144 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDN_08280 | XZJ15859.1 | OG0000785 | CP198621.1:1761246–1761665 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDN_00800 | XZJ17265.1 | OG0001124 | CP198621.1:145106–147703 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDN_13210 | XZJ16816.1 | OG0001228 | CP198621.1:2894172–2895695 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDN_02080 | XZJ17490.1 | OG0001394 | CP198621.1:400909–401691 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDN_14345 | XZJ17029.1 | OG0001639 | CP198621.1:3158939–3159715 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.