Assembly
ASM5225194v1
BioProject PRJNA1294857 · BioSample SAMN50128720
GENOME-RESOLVED EVIDENCE
GCA_052251945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3298405 bp · GC 28.500%
Completeness 96.480% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDT_08205 | XZJ18832.1 | OG0000061 | CP198756.1:1737054–1738406 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDT_14100 | XZJ19969.1 | OG0000131 | CP198756.1:3118802–3119755 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDT_08215 | XZJ18834.1 | OG0000212 | CP198756.1:1738840–1739331 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDT_02075 | XZJ20441.1 | OG0000229 | CP198756.1:405217–406065 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDT_02790 | XZJ20556.1 | OG0000234 | CP198756.1:538704–539882 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDT_08210 | XZJ18833.1 | OG0000785 | CP198756.1:1738418–1738837 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDT_00775 | XZJ20212.1 | OG0001124 | CP198756.1:145414–148011 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDT_12990 | XZJ19763.1 | OG0001228 | CP198756.1:2861770–2863293 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDT_02055 | XZJ20437.1 | OG0001394 | CP198756.1:401308–402090 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDT_14140 | XZJ19977.1 | OG0001639 | CP198756.1:3129627–3130403 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.