Assembly
ASM5225195v1
BioProject PRJNA1294857 · BioSample SAMN50128716
GENOME-RESOLVED EVIDENCE
GCA_052251955.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3417756 bp · GC 28.500%
Completeness 97.080% · contamination 3.960%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDP_08275 | XZJ21689.1 | OG0000061 | CP198613.1:1759825–1761177 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDP_14310 | XZJ22855.1 | OG0000131 | CP198613.1:3148073–3149026 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDP_08285 | XZJ21691.1 | OG0000212 | CP198613.1:1761611–1762102 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDP_02100 | XZJ23326.1 | OG0000229 | CP198613.1:404760–405608 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDP_02810 | XZJ23440.1 | OG0000234 | CP198613.1:538908–540086 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDP_08280 | XZJ21690.1 | OG0000785 | CP198613.1:1761189–1761608 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDP_00800 | XZJ23098.1 | OG0001124 | CP198613.1:145048–147645 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDP_13215 | XZJ22650.1 | OG0001228 | CP198613.1:2894115–2895638 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDP_02080 | XZJ23322.1 | OG0001394 | CP198613.1:400851–401633 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDP_14350 | XZJ22863.1 | OG0001639 | CP198613.1:3158882–3159658 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.