Assembly
ASM5225200v1
BioProject PRJNA1294857 · BioSample SAMN50128702
GENOME-RESOLVED EVIDENCE
GCA_052252005.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3782706 bp · GC 28.000%
Completeness 96.440% · contamination 8.430%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDB_08660 | XZJ30715.1 | OG0000061 | CP198668.1:1807820–1809172 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDB_15065 | XZJ31946.1 | OG0000131 | CP198668.1:3245466–3246419 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDB_08670 | XZJ30717.1 | OG0000212 | CP198668.1:1809606–1810097 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDB_02090 | XZJ32419.1 | OG0000229 | CP198668.1:408653–409501 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDB_02750 | XZJ32524.1 | OG0000234 | CP198668.1:534678–535856 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDB_08665 | XZJ30716.1 | OG0000785 | CP198668.1:1809184–1809603 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDB_00710 | XZJ32175.1 | OG0001124 | CP198668.1:132981–135578 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDB_14055 | XZJ31758.1 | OG0001228 | CP198668.1:3003997–3005520 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDB_02070 | XZJ32415.1 | OG0001394 | CP198668.1:404744–405526 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDB_15105 | XZJ31954.1 | OG0001639 | CP198668.1:3256297–3257073 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.