Assembly
ASM5225201v1
BioProject PRJNA1294857 · BioSample SAMN50128696
GENOME-RESOLVED EVIDENCE
GCA_052252015.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3807898 bp · GC 28.000%
Completeness 95.240% · contamination 9.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXC5_07530 | XZJ36946.1 | OG0000061 | CP198706.1:1666806–1668158 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXC5_00695 | XZJ35632.1 | OG0000131 | CP198706.1:154896–155849 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXC5_07520 | XZJ36944.1 | OG0000212 | CP198706.1:1665881–1666372 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXC5_14020 | XZJ35112.1 | OG0000229 | CP198706.1:3082173–3083021 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXC5_13370 | XZJ35009.1 | OG0000234 | CP198706.1:2959196–2960374 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXC5_07525 | XZJ36945.1 | OG0000785 | CP198706.1:1666375–1666794 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXC5_15415 | XZJ35359.1 | OG0001124 | CP198706.1:3359405–3362002 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXC5_14040 | XZJ35116.1 | OG0001394 | CP198706.1:3086147–3086929 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXC5_00640 | XZJ35621.1 | OG0001639 | CP198706.1:141154–141930 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.