Assembly
ASM5225212v1
BioProject PRJNA1294857 · BioSample SAMN50128686
GENOME-RESOLVED EVIDENCE
GCA_052252125.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3441867 bp · GC 28.500%
Completeness 95.820% · contamination 6.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCV_08600 | XZJ40621.1 | OG0000061 | CP198517.1:1811846–1813198 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCV_15070 | XZJ41868.1 | OG0000131 | CP198517.1:3280403–3281356 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCV_08610 | XZJ40623.1 | OG0000212 | CP198517.1:1813632–1814123 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCV_01980 | XZJ42333.1 | OG0000229 | CP198517.1:387096–387944 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCV_02830 | XZJ42475.1 | OG0000234 | CP198517.1:538805–539983 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCV_08605 | XZJ40622.1 | OG0000785 | CP198517.1:1813210–1813629 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCV_00685 | XZJ42102.1 | OG0001124 | CP198517.1:128073–130670 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXCV_01960 | XZJ42329.1 | OG0001394 | CP198517.1:383188–383970 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCV_15125 | XZJ41879.1 | OG0001639 | CP198517.1:3294351–3295127 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.