Assembly
ASM5225215v1
BioProject PRJNA1294857 · BioSample SAMN50128701
GENOME-RESOLVED EVIDENCE
GCA_052252155.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3661976 bp · GC 28.000%
Completeness 96.670% · contamination 5.710%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDA_08700 | XZJ37487.1 | OG0000061 | CP198679.1:1849723–1851075 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDA_14865 | XZJ38666.1 | OG0000131 | CP198679.1:3255654–3256607 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDA_08710 | XZJ37489.1 | OG0000212 | CP198679.1:1851509–1852000 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDA_02110 | XZJ39148.1 | OG0000229 | CP198679.1:412581–413429 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDA_02955 | XZJ39288.1 | OG0000234 | CP198679.1:569304–570482 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDA_08705 | XZJ37488.1 | OG0000785 | CP198679.1:1851087–1851506 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDA_00810 | XZJ38918.1 | OG0001124 | CP198679.1:154042–156639 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDA_13775 | XZJ38467.1 | OG0001228 | CP198679.1:2998495–3000018 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDA_02090 | XZJ39144.1 | OG0001394 | CP198679.1:408672–409454 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDA_14905 | XZJ38674.1 | OG0001639 | CP198679.1:3266432–3267208 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.