Assembly
ASM5225258v1
BioProject PRJNA1294857 · BioSample SAMN50128713
GENOME-RESOLVED EVIDENCE
GCA_052252585.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3406845 bp · GC 28.500%
Completeness 97.300% · contamination 2.250%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDM_06575 | XZJ46172.1 | OG0000061 | CP198625.1:1503064–1504416 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDM_00695 | XZJ45052.1 | OG0000131 | CP198625.1:156452–157405 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDM_06565 | XZJ46170.1 | OG0000212 | CP198625.1:1502139–1502630 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDM_12615 | XZJ44560.1 | OG0000229 | CP198625.1:2822921–2823769 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDM_12015 | XZJ44468.1 | OG0000234 | CP198625.1:2707839–2709017 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDM_06570 | XZJ46171.1 | OG0000785 | CP198625.1:1502633–1503052 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDM_14010 | XZJ44805.1 | OG0001124 | CP198625.1:3102034–3104631 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDM_01805 | XZJ45255.1 | OG0001228 | CP198625.1:406652–408175 + | L-lactate permease [Clostridium perfringens] |
| crtACSXDM_12635 | XZJ44564.1 | OG0001394 | CP198625.1:2826896–2827678 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDM_00655 | XZJ45044.1 | OG0001639 | CP198625.1:145798–146574 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.