Assembly
ASM5225259v1
BioProject PRJNA1294857 · BioSample SAMN50128709
GENOME-RESOLVED EVIDENCE
GCA_052252595.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3433791 bp · GC 28.500%
Completeness 97.480% · contamination 3.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDI_11880 | XZJ47376.1 | OG0000061 | CP198632.1:2599026–2600378 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDI_03030 | XZJ48583.1 | OG0000131 | CP198632.1:719792–720745 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDI_11890 | XZJ47378.1 | OG0000212 | CP198632.1:2600812–2601303 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDI_05755 | XZJ49053.1 | OG0000229 | CP198632.1:1277774–1278622 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDI_06485 | XZJ49170.1 | OG0000234 | CP198632.1:1411777–1412955 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDI_11885 | XZJ47377.1 | OG0000785 | CP198632.1:2600390–2600809 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDI_04400 | XZJ48814.1 | OG0001124 | CP198632.1:1004981–1007578 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDI_02005 | XZJ48392.1 | OG0001228 | CP198632.1:479479–481002 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDI_05735 | XZJ49049.1 | OG0001394 | CP198632.1:1273865–1274647 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDI_03070 | XZJ48591.1 | OG0001639 | CP198632.1:730626–731402 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.