Assembly
ASM5225268v1
BioProject PRJNA1294857 · BioSample SAMN50128707
GENOME-RESOLVED EVIDENCE
GCA_052252685.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3464603 bp · GC 28.500%
Completeness 97.770% · contamination 3.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDG_08390 | XZJ49647.1 | OG0000061 | CP198640.1:1771979–1773331 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDG_14810 | XZJ50883.1 | OG0000131 | CP198640.1:3223772–3224725 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDG_08400 | XZJ49649.1 | OG0000212 | CP198640.1:1773765–1774256 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDG_02010 | XZJ51343.1 | OG0000229 | CP198640.1:392431–393279 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDG_02750 | XZJ51463.1 | OG0000234 | CP198640.1:527052–528230 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDG_08395 | XZJ49648.1 | OG0000785 | CP198640.1:1773343–1773762 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDG_00705 | XZJ51112.1 | OG0001124 | CP198640.1:132148–134745 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDG_13740 | XZJ50685.1 | OG0001228 | CP198640.1:2974369–2975892 - | L-lactate permease [Clostridium perfringens] |
| crtACSXDG_01990 | XZJ51339.1 | OG0001394 | CP198640.1:388522–389304 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDG_14850 | XZJ50891.1 | OG0001639 | CP198640.1:3234605–3235381 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.