Assembly
ASM5225300v1
BioProject PRJNA1294857 · BioSample SAMN50128705
GENOME-RESOLVED EVIDENCE
GCA_052253005.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3464518 bp · GC 28.500%
Completeness 97.230% · contamination 3.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDE_01855 | XZJ57432.1 | OG0000061 | CP198648.1:405285–406637 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDE_10910 | XZJ56204.1 | OG0000131 | CP198648.1:2329608–2330561 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDE_01845 | XZJ57430.1 | OG0000212 | CP198648.1:404360–404851 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDE_08240 | XZJ55746.1 | OG0000229 | CP198648.1:1785337–1786185 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDE_07500 | XZJ58519.1 | OG0000234 | CP198648.1:1650386–1651564 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDE_01850 | XZJ57431.1 | OG0000785 | CP198648.1:404854–405273 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDE_09545 | XZJ55976.1 | OG0001124 | CP198648.1:2043871–2046468 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDE_11980 | XZJ56401.1 | OG0001228 | CP198648.1:2578357–2579880 + | L-lactate permease [Clostridium perfringens] |
| crtACSXDE_08260 | XZJ55750.1 | OG0001394 | CP198648.1:1789312–1790094 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDE_10870 | XZJ56196.1 | OG0001639 | CP198648.1:2318952–2319728 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.