Assembly
ASM5225301v1
BioProject PRJNA1294857 · BioSample SAMN50128748
GENOME-RESOLVED EVIDENCE
GCA_052253015.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3717720 bp · GC 28.000%
Completeness 95.330% · contamination 3.220%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEL_11505 | XZJ59474.1 | OG0000061 | CP198872.1:2461276–2462628 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEL_02455 | XZJ60542.1 | OG0000131 | CP198872.1:492117–493070 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEL_11515 | XZJ59476.1 | OG0000212 | CP198872.1:2463062–2463553 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEL_05145 | XZJ61049.1 | OG0000229 | CP198872.1:1091381–1092229 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEL_05810 | XZJ61152.1 | OG0000234 | CP198872.1:1217999–1219177 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEL_11510 | XZJ59475.1 | OG0000785 | CP198872.1:2462640–2463059 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEL_00900 | XZJ60275.1 | OG0001124 | CP198872.1:174890–177487 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEL_03460 | XZJ60728.1 | OG0001228 | CP198872.1:728453–729976 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXEL_11555 | XZJ59484.1 | OG0001328 | CP198872.1:2469619–2470194 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXEL_05125 | XZJ61045.1 | OG0001394 | CP198872.1:1087472–1088254 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEL_02415 | XZJ60534.1 | OG0001639 | CP198872.1:481463–482239 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.