Assembly
ASM5225312v1
BioProject PRJNA1294857 · BioSample SAMN50128700
GENOME-RESOLVED EVIDENCE
GCA_052253125.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3613942 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXC9_06850 | XZJ77260.1 | OG0000061 | CP198690.1:1557884–1559236 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXC9_00675 | XZJ76082.1 | OG0000131 | CP198690.1:152352–153305 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXC9_06840 | XZJ77258.1 | OG0000212 | CP198690.1:1556959–1557450 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXC9_13440 | XZJ75602.1 | OG0000229 | CP198690.1:2995089–2995937 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXC9_12595 | XZJ75462.1 | OG0000234 | CP198690.1:2838036–2839214 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXC9_06845 | XZJ77259.1 | OG0000785 | CP198690.1:1557453–1557872 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXC9_14740 | XZJ75832.1 | OG0001124 | CP198690.1:3251879–3254476 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXC9_01770 | XZJ76283.1 | OG0001228 | CP198690.1:408941–410464 + | L-lactate permease [Clostridium perfringens] |
| crtACSXC9_13460 | XZJ75606.1 | OG0001394 | CP198690.1:2999064–2999846 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXC9_00635 | XZJ76074.1 | OG0001639 | CP198690.1:141751–142527 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.