Assembly
ASM5225313v1
BioProject PRJNA1294857 · BioSample SAMN50128699
GENOME-RESOLVED EVIDENCE
GCA_052253135.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3503610 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXC8_06450 | XZJ80313.1 | OG0000061 | CP198700.1:1494114–1495466 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXC8_00685 | XZJ79212.1 | OG0000131 | CP198700.1:154087–155040 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXC8_06440 | XZJ80311.1 | OG0000212 | CP198700.1:1493189–1493680 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXC8_13085 | XZJ78740.1 | OG0000229 | CP198700.1:2898838–2899686 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXC8_12420 | XZJ78636.1 | OG0000234 | CP198700.1:2769900–2771078 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXC8_06445 | XZJ80312.1 | OG0000785 | CP198700.1:1493683–1494102 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXC8_14375 | XZJ78968.1 | OG0001124 | CP198700.1:3155602–3158199 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXC8_01765 | XZJ79410.1 | OG0001228 | CP198700.1:403696–405219 + | L-lactate permease [Clostridium perfringens] |
| crtACSXC8_13105 | XZJ78744.1 | OG0001394 | CP198700.1:2902813–2903595 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXC8_00645 | XZJ79204.1 | OG0001639 | CP198700.1:143435–144211 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.