Assembly
ASM5225318v1
BioProject PRJNA1294857 · BioSample SAMN50128685
GENOME-RESOLVED EVIDENCE
GCA_052253185.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3576927 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCU_08245 | XZJ84018.1 | OG0000061 | CP198518.1:1738775–1740127 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCU_14140 | XZJ85145.1 | OG0000131 | CP198518.1:3109441–3110394 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCU_08255 | XZJ84020.1 | OG0000212 | CP198518.1:1740561–1741052 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCU_02235 | XZJ85648.1 | OG0000229 | CP198518.1:427526–428374 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCU_02845 | XZJ85740.1 | OG0000234 | CP198518.1:545197–546375 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCU_08250 | XZJ84019.1 | OG0000785 | CP198518.1:1740139–1740558 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCU_00935 | XZJ85419.1 | OG0001124 | CP198518.1:168381–170978 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCU_12950 | XZJ84924.1 | OG0001228 | CP198518.1:2835326–2836849 - | L-lactate permease [Clostridium perfringens] |
| crtACSXCU_02215 | XZJ85644.1 | OG0001394 | CP198518.1:423617–424399 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCU_14185 | XZJ85153.1 | OG0001639 | CP198518.1:3120271–3121047 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.