Assembly
ASM5225324v1
BioProject PRJNA1294857 · BioSample SAMN50128670
GENOME-RESOLVED EVIDENCE
GCA_052253245.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3292770 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCF_08275 | XZJ87227.1 | OG0000061 | CP198579.1:1751283–1752635 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCF_13795 | XZJ88270.1 | OG0000131 | CP198579.1:3011915–3012868 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCF_08285 | XZJ87229.1 | OG0000212 | CP198579.1:1753069–1753560 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCF_02140 | XZJ88759.1 | OG0000229 | CP198579.1:416188–417036 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCF_02750 | XZJ88852.1 | OG0000234 | CP198579.1:534114–535292 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCF_08280 | XZJ87228.1 | OG0000785 | CP198579.1:1752647–1753066 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCF_00855 | XZJ88532.1 | OG0001124 | CP198579.1:158925–161522 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCF_12690 | XZJ88066.1 | OG0001228 | CP198579.1:2757438–2758961 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCF_08325 | XZJ87237.1 | OG0001328 | CP198579.1:1759626–1760201 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCF_02120 | XZJ88755.1 | OG0001394 | CP198579.1:412279–413061 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCF_13835 | XZJ88278.1 | OG0001639 | CP198579.1:3022744–3023520 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.