Assembly
ASM5225344v1
BioProject PRJNA1294857 · BioSample SAMN50128668
GENOME-RESOLVED EVIDENCE
GCA_052253445.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3271101 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCD_04675 | XZJ95449.1 | OG0000061 | CP198588.1:1061818–1063170 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCD_13620 | XZJ94403.1 | OG0000131 | CP198588.1:2970408–2971361 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCD_04665 | XZJ95447.1 | OG0000212 | CP198588.1:1060893–1061384 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCD_10795 | XZJ93910.1 | OG0000229 | CP198588.1:2397417–2398265 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCD_10185 | XZJ93816.1 | OG0000234 | CP198588.1:2279161–2280339 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCD_04670 | XZJ95448.1 | OG0000785 | CP198588.1:1061387–1061806 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCD_12080 | XZJ94139.1 | OG0001124 | CP198588.1:2652931–2655528 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCD_00260 | XZJ94606.1 | OG0001228 | CP198588.1:55622–57145 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCD_04625 | XZJ95439.1 | OG0001328 | CP198588.1:1054252–1054827 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCD_10815 | XZJ93914.1 | OG0001394 | CP198588.1:2401392–2402174 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCD_13580 | XZJ94395.1 | OG0001639 | CP198588.1:2959756–2960532 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.