Assembly
ASM5225394v1
BioProject PRJNA1294857 · BioSample SAMN50128652
GENOME-RESOLVED EVIDENCE
GCA_052253945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3619466 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBX_08425 | XZK05843.1 | OG0000061 | CP198437.1:1788174–1789526 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBX_14385 | XZK06975.1 | OG0000131 | CP198437.1:3143860–3144813 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBX_08435 | XZK05845.1 | OG0000212 | CP198437.1:1789960–1790451 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBX_02110 | XZK07478.1 | OG0000229 | CP198437.1:410785–411633 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBX_02830 | XZK07594.1 | OG0000234 | CP198437.1:545810–546988 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBX_08430 | XZK05844.1 | OG0000785 | CP198437.1:1789538–1789957 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBX_00790 | XZK07243.1 | OG0001124 | CP198437.1:148459–151056 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBX_13330 | XZK06782.1 | OG0001228 | CP198437.1:2900007–2901530 - | L-lactate permease [Clostridium perfringens] |
| crtACSXBX_02090 | XZK07474.1 | OG0001394 | CP198437.1:406876–407658 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBX_14430 | XZK06984.1 | OG0001639 | CP198437.1:3154678–3155454 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.