Assembly
ASM5225395v1
BioProject PRJNA1294857 · BioSample SAMN50128649
GENOME-RESOLVED EVIDENCE
GCA_052253955.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3719076 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBU_11145 | XZK09480.1 | OG0000061 | CP198468.1:2404949–2406301 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBU_01990 | XZK10710.1 | OG0000131 | CP198468.1:457341–458294 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBU_11155 | XZK09482.1 | OG0000212 | CP198468.1:2406735–2407226 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBU_04870 | XZK11211.1 | OG0000229 | CP198468.1:1035619–1036467 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBU_05545 | XZK11315.1 | OG0000234 | CP198468.1:1162307–1163485 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBU_11150 | XZK09481.1 | OG0000785 | CP198468.1:2406313–2406732 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBU_03550 | XZK10977.1 | OG0001124 | CP198468.1:773293–775890 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBU_00930 | XZK10516.1 | OG0001228 | CP198468.1:213475–214998 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXBU_11195 | XZK09490.1 | OG0001328 | CP198468.1:2413292–2413867 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXBU_04850 | XZK11207.1 | OG0001394 | CP198468.1:1031710–1032492 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBU_02035 | XZK10719.1 | OG0001639 | CP198468.1:468159–468935 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.