Assembly
ASM5225396v1
BioProject PRJNA1294857 · BioSample SAMN50128651
GENOME-RESOLVED EVIDENCE
GCA_052253965.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3796917 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBW_08345 | XZK12250.1 | OG0000061 | CP198450.1:1766270–1767622 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBW_14530 | XZK13443.1 | OG0000131 | CP198450.1:3172085–3173038 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBW_08355 | XZK12252.1 | OG0000212 | CP198450.1:1768056–1768547 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBW_02035 | XZK14035.1 | OG0000229 | CP198450.1:401340–402188 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBW_02815 | XZK14164.1 | OG0000234 | CP198450.1:545826–547004 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBW_08350 | XZK12251.1 | OG0000785 | CP198450.1:1767634–1768053 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBW_00505 | XZK13761.1 | OG0001124 | CP198450.1:102366–104963 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBW_13420 | XZK13237.1 | OG0001228 | CP198450.1:2912917–2914440 - | L-lactate permease [Clostridium perfringens] |
| crtACSXBW_02015 | XZK14031.1 | OG0001394 | CP198450.1:397431–398213 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBW_14570 | XZK13451.1 | OG0001639 | CP198450.1:3182917–3183693 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.