Assembly
ASM5225397v1
BioProject PRJNA1294857 · BioSample SAMN50128647
GENOME-RESOLVED EVIDENCE
GCA_052253975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3674397 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBS_07235 | XZK18375.1 | OG0000061 | CP198485.1:1592196–1593548 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBS_00780 | XZK17164.1 | OG0000131 | CP198485.1:167094–168047 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBS_07225 | XZK18373.1 | OG0000212 | CP198485.1:1591271–1591762 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBS_13505 | XZK16663.1 | OG0000229 | CP198485.1:2962030–2962878 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBS_12830 | XZK16556.1 | OG0000234 | CP198485.1:2835012–2836190 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBS_07230 | XZK18374.1 | OG0000785 | CP198485.1:1591765–1592184 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBS_14825 | XZK16897.1 | OG0001124 | CP198485.1:3222607–3225204 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBS_01840 | XZK17357.1 | OG0001228 | CP198485.1:410390–411913 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXBS_07185 | XZK18365.1 | OG0001328 | CP198485.1:1584630–1585205 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXBS_13525 | XZK16667.1 | OG0001394 | CP198485.1:2966005–2966787 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBS_00735 | XZK17155.1 | OG0001639 | CP198485.1:156453–157229 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.