Assembly
ASM5225403v1
BioProject PRJNA1294857 · BioSample SAMN50128678
GENOME-RESOLVED EVIDENCE
GCA_052254035.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3411125 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCN_07390 | XZK31335.1 | OG0000061 | CP198557.1:1646324–1647676 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCN_00825 | XZK30067.1 | OG0000131 | CP198557.1:177924–178877 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCN_07380 | XZK31333.1 | OG0000212 | CP198557.1:1645399–1645890 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCN_13800 | XZK29578.1 | OG0000229 | CP198557.1:3022838–3023686 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCN_13095 | XZK29464.1 | OG0000234 | CP198557.1:2892375–2893553 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCN_07385 | XZK31334.1 | OG0000785 | CP198557.1:1645893–1646312 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCN_15105 | XZK29809.1 | OG0001124 | CP198557.1:3279643–3282240 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCN_01905 | XZK30270.1 | OG0001228 | CP198557.1:427953–429476 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCN_07340 | XZK31326.1 | OG0001328 | CP198557.1:1638755–1639330 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCN_13820 | XZK29582.1 | OG0001394 | CP198557.1:3026812–3027594 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCN_00760 | XZK30054.1 | OG0001639 | CP198557.1:162140–162916 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.