Assembly
ASM5225408v1
BioProject PRJNA1294857 · BioSample SAMN50128682
GENOME-RESOLVED EVIDENCE
GCA_052254085.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3576927 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCR_09070 | XZK31678.1 | OG0000061 | CP198539.1:1924788–1926140 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCR_00165 | XZK32808.1 | OG0000131 | CP198539.1:34216–35169 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCR_09080 | XZK31680.1 | OG0000212 | CP198539.1:1926574–1927065 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCR_03065 | XZK33311.1 | OG0000229 | CP198539.1:613539–614387 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCR_03675 | XZK33405.1 | OG0000234 | CP198539.1:731210–732388 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCR_09075 | XZK31679.1 | OG0000785 | CP198539.1:1926152–1926571 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCR_01765 | XZK33082.1 | OG0001124 | CP198539.1:354394–356991 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCR_13775 | XZK32587.1 | OG0001228 | CP198539.1:3021339–3022862 - | L-lactate permease [Clostridium perfringens] |
| crtACSXCR_03045 | XZK33307.1 | OG0001394 | CP198539.1:609630–610412 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCR_00210 | XZK32816.1 | OG0001639 | CP198539.1:45046–45822 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.