Assembly
ASM5225409v1
BioProject PRJNA1294857 · BioSample SAMN50128677
GENOME-RESOLVED EVIDENCE
GCA_052254095.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3302818 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCM_02020 | XZK36381.1 | OG0000061 | CP198558.1:459886–461238 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCM_07535 | XZK34719.1 | OG0000131 | CP198558.1:1720518–1721471 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCM_02030 | XZK36383.1 | OG0000212 | CP198558.1:461672–462163 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCM_10360 | XZK35211.1 | OG0000229 | CP198558.1:2293614–2294462 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCM_10970 | XZK35304.1 | OG0000234 | CP198558.1:2411540–2412718 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCM_02025 | XZK36382.1 | OG0000785 | CP198558.1:461250–461669 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCM_09075 | XZK34983.1 | OG0001124 | CP198558.1:2036351–2038948 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCM_06430 | XZK37217.1 | OG0001228 | CP198558.1:1466041–1467564 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCM_02070 | XZK36391.1 | OG0001328 | CP198558.1:468229–468804 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCM_10340 | XZK35207.1 | OG0001394 | CP198558.1:2289705–2290487 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCM_07575 | XZK34727.1 | OG0001639 | CP198558.1:1731347–1732123 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.