Assembly
ASM5225411v1
BioProject PRJNA1294857 · BioSample SAMN50128694
GENOME-RESOLVED EVIDENCE
GCA_052254115.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3773959 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXC3_14795 | XZK41620.1 | OG0000061 | CP198714.1:3172839–3174191 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXC3_07960 | XZK43368.1 | OG0000131 | CP198714.1:1660929–1661882 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXC3_14785 | XZK41618.1 | OG0000212 | CP198714.1:3171914–3172405 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXC3_04980 | XZK42846.1 | OG0000229 | CP198714.1:1059318–1060166 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXC3_04330 | XZK42743.1 | OG0000234 | CP198714.1:936341–937519 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXC3_14790 | XZK41619.1 | OG0000785 | CP198714.1:3172408–3172827 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXC3_06375 | XZK43095.1 | OG0001124 | CP198714.1:1336549–1339146 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXC3_05000 | XZK42850.1 | OG0001394 | CP198714.1:1063292–1064074 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXC3_07905 | XZK43357.1 | OG0001639 | CP198714.1:1647187–1647963 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.