Assembly
ASM5225415v1
BioProject PRJNA1294857 · BioSample SAMN50128688
GENOME-RESOLVED EVIDENCE
GCA_052254155.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3452533 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCX_08360 | XZK46710.1 | OG0000061 | CP198720.1:1774997–1776349 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCX_14830 | XZK47950.1 | OG0000131 | CP198720.1:3243554–3244507 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCX_08370 | XZK46712.1 | OG0000212 | CP198720.1:1776783–1777274 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCX_01980 | XZK48415.1 | OG0000229 | CP198720.1:387031–387879 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCX_02585 | XZK48509.1 | OG0000234 | CP198720.1:501956–503134 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCX_08365 | XZK46711.1 | OG0000785 | CP198720.1:1776361–1776780 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCX_00685 | XZK48184.1 | OG0001124 | CP198720.1:128008–130605 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXCX_01960 | XZK48411.1 | OG0001394 | CP198720.1:383123–383905 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCX_14885 | XZK47961.1 | OG0001639 | CP198720.1:3257502–3258278 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.