Assembly
ASM5225472v1
BioProject PRJNA1294857 · BioSample SAMN50128672
GENOME-RESOLVED EVIDENCE
GCA_052254725.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3349003 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCH_08170 | XZK55860.1 | OG0000061 | CP198573.1:1733492–1734844 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCH_14695 | XZK57113.1 | OG0000131 | CP198573.1:3196039–3196992 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCH_08180 | XZK55862.1 | OG0000212 | CP198573.1:1735278–1735769 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCH_01995 | XZK57569.1 | OG0000229 | CP198573.1:392014–392862 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCH_02715 | XZK57685.1 | OG0000234 | CP198573.1:524778–525956 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCH_08175 | XZK55861.1 | OG0000785 | CP198573.1:1734856–1735275 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCH_00705 | XZK57340.1 | OG0001124 | CP198573.1:132973–135570 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCH_13580 | XZK56905.1 | OG0001228 | CP198573.1:2932328–2933851 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCH_08220 | XZK55870.1 | OG0001328 | CP198573.1:1742124–1742699 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCH_01975 | XZK57565.1 | OG0001394 | CP198573.1:388105–388887 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCH_14735 | XZK57121.1 | OG0001639 | CP198573.1:3206883–3207659 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.