Assembly
ASM5225511v1
BioProject PRJNA1294857 · BioSample SAMN50128671
GENOME-RESOLVED EVIDENCE
GCA_052255115.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3262741 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCG_08260 | XZK62024.1 | OG0000061 | CP198574.1:1751221–1752573 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCG_13735 | XZK63065.1 | OG0000131 | CP198574.1:2999853–3000806 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCG_08270 | XZK62026.1 | OG0000212 | CP198574.1:1753007–1753498 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCG_02140 | XZK63558.1 | OG0000229 | CP198574.1:416126–416974 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCG_02750 | XZK63652.1 | OG0000234 | CP198574.1:534052–535230 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCG_08265 | XZK62025.1 | OG0000785 | CP198574.1:1752585–1753004 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCG_00855 | XZK63329.1 | OG0001124 | CP198574.1:158863–161460 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCG_12635 | XZK62861.1 | OG0001228 | CP198574.1:2745376–2746899 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCG_08310 | XZK62034.1 | OG0001328 | CP198574.1:1759564–1760139 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCG_02120 | XZK63554.1 | OG0001394 | CP198574.1:412217–412999 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCG_13775 | XZK63073.1 | OG0001639 | CP198574.1:3010682–3011458 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.