Assembly
ASM5225517v1
BioProject PRJNA1294857 · BioSample SAMN50128669
GENOME-RESOLVED EVIDENCE
GCA_052255175.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3271230 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCE_05030 | XZK67016.1 | OG0000061 | CP198584.1:1138499–1139851 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCE_13990 | XZK65972.1 | OG0000131 | CP198584.1:3047089–3048042 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCE_05020 | XZK67014.1 | OG0000212 | CP198584.1:1137574–1138065 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCE_11165 | XZK65480.1 | OG0000229 | CP198584.1:2474098–2474946 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCE_10555 | XZK65387.1 | OG0000234 | CP198584.1:2355842–2357020 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCE_05025 | XZK67015.1 | OG0000785 | CP198584.1:1138068–1138487 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCE_12450 | XZK65708.1 | OG0001124 | CP198584.1:2729612–2732209 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCE_00615 | XZK66176.1 | OG0001228 | CP198584.1:132173–133696 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXCE_04980 | XZK67006.1 | OG0001328 | CP198584.1:1130933–1131508 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXCE_11185 | XZK65484.1 | OG0001394 | CP198584.1:2478073–2478855 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCE_13950 | XZK65964.1 | OG0001639 | CP198584.1:3036437–3037213 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.