Assembly
ASM5225606v1
BioProject PRJNA1294857 · BioSample SAMN50128676
GENOME-RESOLVED EVIDENCE
GCA_052256065.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3554903 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCL_07430 | XZK70286.1 | OG0000061 | CP198563.1:1574534–1575886 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCL_13285 | XZK68586.1 | OG0000131 | CP198563.1:2939935–2940888 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCL_07440 | XZK70288.1 | OG0000212 | CP198563.1:1576320–1576811 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCL_00960 | XZK69068.1 | OG0000229 | CP198563.1:184998–185846 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCL_01570 | XZK69162.1 | OG0000234 | CP198563.1:302535–303713 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCL_07435 | XZK70287.1 | OG0000785 | CP198563.1:1575898–1576317 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCL_14700 | XZK68824.1 | OG0001124 | CP198563.1:3234385–3236982 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCL_12205 | XZK68385.1 | OG0001228 | CP198563.1:2685072–2686595 - | L-lactate permease [Clostridium perfringens] |
| crtACSXCL_00940 | XZK69064.1 | OG0001394 | CP198563.1:181089–181871 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCL_13345 | XZK68598.1 | OG0001639 | CP198563.1:2955541–2956317 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.