Assembly
ASM5225697v1
BioProject PRJNA1294857 · BioSample SAMN50128673
GENOME-RESOLVED EVIDENCE
GCA_052256975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3456791 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCI_08670 | XZK73851.1 | OG0000061 | CP198571.1:1821419–1822771 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCI_14925 | XZK75053.1 | OG0000131 | CP198571.1:3249872–3250825 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCI_08680 | XZK73853.1 | OG0000212 | CP198571.1:1823205–1823696 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCI_02055 | XZK75524.1 | OG0000229 | CP198571.1:401410–402258 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCI_02670 | XZK75617.1 | OG0000234 | CP198571.1:517565–518743 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCI_08675 | XZK73852.1 | OG0000785 | CP198571.1:1822783–1823202 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCI_00685 | XZK75281.1 | OG0001124 | CP198571.1:127692–130289 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSXCI_02035 | XZK75520.1 | OG0001394 | CP198571.1:397502–398284 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCI_14980 | XZK75064.1 | OG0001639 | CP198571.1:3263796–3264572 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.