Assembly
ASM5225709v1
BioProject PRJNA1294857 · BioSample SAMN50128666
GENOME-RESOLVED EVIDENCE
GCA_052257095.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3579699 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCB_06650 | XZK79472.1 | OG0000061 | CP198599.1:1516146–1517498 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCB_00820 | XZK78363.1 | OG0000131 | CP198599.1:175472–176425 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCB_06640 | XZK79470.1 | OG0000212 | CP198599.1:1515221–1515712 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCB_12940 | XZK77854.1 | OG0000229 | CP198599.1:2885191–2886039 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCB_12290 | XZK77753.1 | OG0000234 | CP198599.1:2762446–2763624 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCB_06645 | XZK79471.1 | OG0000785 | CP198599.1:1515715–1516134 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCB_14255 | XZK78088.1 | OG0001124 | CP198599.1:3145005–3147602 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCB_01885 | XZK78557.1 | OG0001228 | CP198599.1:421508–423031 + | L-lactate permease [Clostridium perfringens] |
| crtACSXCB_12960 | XZK77858.1 | OG0001394 | CP198599.1:2889166–2889948 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCB_00775 | XZK78354.1 | OG0001639 | CP198599.1:164831–165607 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.