Assembly
ASM5225792v1
BioProject PRJNA1294857 · BioSample SAMN50128665
GENOME-RESOLVED EVIDENCE
GCA_052257925.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3425908 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXCA_05990 | XZK82541.1 | OG0000061 | CP198318.1:1376261–1377613 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXCA_00150 | XZK81431.1 | OG0000131 | CP198318.1:35587–36540 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXCA_05980 | XZK82539.1 | OG0000212 | CP198318.1:1375336–1375827 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXCA_12280 | XZK80922.1 | OG0000229 | CP198318.1:2745306–2746154 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXCA_11630 | XZK80821.1 | OG0000234 | CP198318.1:2622561–2623739 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXCA_05985 | XZK82540.1 | OG0000785 | CP198318.1:1375830–1376249 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXCA_13595 | XZK81156.1 | OG0001124 | CP198318.1:3005120–3007717 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXCA_01215 | XZK81626.1 | OG0001228 | CP198318.1:281623–283146 + | L-lactate permease [Clostridium perfringens] |
| crtACSXCA_12300 | XZK80926.1 | OG0001394 | CP198318.1:2749281–2750063 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXCA_00105 | XZK81422.1 | OG0001639 | CP198318.1:24946–25722 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.