Assembly
ASM5225924v1
BioProject PRJNA1294857 · BioSample SAMN50128662
GENOME-RESOLVED EVIDENCE
GCA_052259245.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3523608 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXB7_07850 | XZK92663.1 | OG0000061 | CP198356.1:1756129–1757481 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXB7_02020 | XZK94352.1 | OG0000131 | CP198356.1:415455–416408 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXB7_07840 | XZK92661.1 | OG0000212 | CP198356.1:1755204–1755695 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXB7_14140 | XZK93843.1 | OG0000229 | CP198356.1:3125201–3126049 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXB7_13490 | XZK93742.1 | OG0000234 | CP198356.1:3002456–3003634 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXB7_07845 | XZK92662.1 | OG0000785 | CP198356.1:1755698–1756117 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXB7_00425 | XZK94077.1 | OG0001124 | CP198356.1:90812–93409 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXB7_03085 | XZK94546.1 | OG0001228 | CP198356.1:661491–663014 + | L-lactate permease [Clostridium perfringens] |
| crtACSXB7_14160 | XZK93847.1 | OG0001394 | CP198356.1:3129176–3129958 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXB7_01975 | XZK94343.1 | OG0001639 | CP198356.1:404814–405590 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.