Assembly
ASM5225927v1
BioProject PRJNA1294857 · BioSample SAMN50128659
GENOME-RESOLVED EVIDENCE
GCA_052259275.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3603278 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXB4_11320 | XZK96328.1 | OG0000061 | CP198386.1:2472315–2473667 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXB4_05115 | XZK98107.1 | OG0000131 | CP198386.1:1051969–1052922 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXB4_11310 | XZK96326.1 | OG0000212 | CP198386.1:2471390–2471881 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXB4_02215 | XZK97602.1 | OG0000229 | CP198386.1:467524–468372 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXB4_01510 | XZK97488.1 | OG0000234 | CP198386.1:335432–336610 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXB4_11315 | XZK96327.1 | OG0000785 | CP198386.1:2471884–2472303 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXB4_03615 | XZK97850.1 | OG0001124 | CP198386.1:743482–746079 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXB4_06395 | XZK98347.1 | OG0001228 | CP198386.1:1337867–1339390 + | L-lactate permease [Clostridium perfringens] |
| crtACSXB4_02235 | XZK97606.1 | OG0001394 | CP198386.1:471499–472281 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXB4_05075 | XZK98099.1 | OG0001639 | CP198386.1:1041312–1042088 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.