Assembly
ASM5225990v1
BioProject PRJNA1294857 · BioSample SAMN50128654
GENOME-RESOLVED EVIDENCE
GCA_052259905.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3666543 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBZ_08380 | XZL02084.1 | OG0000061 | CP198420.1:1780274–1781626 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBZ_14830 | XZL03299.1 | OG0000131 | CP198420.1:3205769–3206722 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBZ_08390 | XZL02086.1 | OG0000212 | CP198420.1:1782060–1782551 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBZ_02110 | XZL03799.1 | OG0000229 | CP198420.1:410947–411795 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBZ_02785 | XZL03904.1 | OG0000234 | CP198420.1:537635–538813 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBZ_08385 | XZL02085.1 | OG0000785 | CP198420.1:1781638–1782057 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBZ_00790 | XZL03565.1 | OG0001124 | CP198420.1:148621–151218 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBZ_13770 | XZL03106.1 | OG0001228 | CP198420.1:2961909–2963432 - | L-lactate permease [Clostridium perfringens] |
| crtACSXBZ_02090 | XZL03795.1 | OG0001394 | CP198420.1:407038–407820 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBZ_14875 | XZL03308.1 | OG0001639 | CP198420.1:3216587–3217363 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.