Assembly
ASM5226147v1
BioProject PRJNA1294857 · BioSample SAMN50128637
GENOME-RESOLVED EVIDENCE
GCA_052261475.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3311677 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBI_10460 | XZL12141.1 | OG0000061 | CP198229.1:2260540–2261892 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBI_01395 | XZL13271.1 | OG0000131 | CP198229.1:339985–340938 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBI_10470 | XZL12143.1 | OG0000212 | CP198229.1:2262326–2262817 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBI_04120 | XZL13737.1 | OG0000229 | CP198229.1:891867–892715 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBI_04830 | XZL13850.1 | OG0000234 | CP198229.1:1021257–1022435 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBI_10465 | XZL12142.1 | OG0000785 | CP198229.1:2261904–2262323 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBI_02820 | XZL13508.1 | OG0001124 | CP198229.1:632832–635429 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBI_00305 | XZL13070.1 | OG0001228 | CP198229.1:82763–84286 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXBI_10510 | XZL12151.1 | OG0001328 | CP198229.1:2268883–2269458 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXBI_04100 | XZL13733.1 | OG0001394 | CP198229.1:887958–888740 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBI_01435 | XZL13279.1 | OG0001639 | CP198229.1:350814–351590 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.