Assembly
ASM5226306v1
BioProject PRJNA1294857 · BioSample SAMN50128631
GENOME-RESOLVED EVIDENCE
GCA_052263065.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3358146 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXBC_06925 | XZL29200.1 | OG0000061 | CP198274.1:1578074–1579426 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXBC_00760 | XZL28021.1 | OG0000131 | CP198274.1:168182–169135 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXBC_06915 | XZL29198.1 | OG0000212 | CP198274.1:1577149–1577640 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXBC_13315 | XZL27540.1 | OG0000229 | CP198274.1:2962108–2962956 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXBC_12660 | XZL27437.1 | OG0000234 | CP198274.1:2836704–2837882 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXBC_06920 | XZL29199.1 | OG0000785 | CP198274.1:1577643–1578062 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXBC_14620 | XZL27771.1 | OG0001124 | CP198274.1:3218955–3221552 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXBC_01830 | XZL28221.1 | OG0001228 | CP198274.1:412665–414188 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXBC_06875 | XZL29191.1 | OG0001328 | CP198274.1:1570505–1571080 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXBC_13335 | XZL27544.1 | OG0001394 | CP198274.1:2966082–2966864 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXBC_00695 | XZL28008.1 | OG0001639 | CP198274.1:152404–153180 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.