Assembly
ASM5226388v1
BioProject PRJNA1294857 · BioSample SAMN50128623
GENOME-RESOLVED EVIDENCE
GCA_052263885.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3627294 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXA4_06390 | XZL35130.1 | OG0000061 | CP198302.1:1450216–1451568 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXA4_00330 | XZL33976.1 | OG0000131 | CP198302.1:80226–81179 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXA4_06380 | XZL35128.1 | OG0000212 | CP198302.1:1449291–1449782 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXA4_12895 | XZL33464.1 | OG0000229 | CP198302.1:2837336–2838184 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXA4_12215 | XZL33358.1 | OG0000234 | CP198302.1:2710018–2711196 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXA4_06385 | XZL35129.1 | OG0000785 | CP198302.1:1449785–1450204 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXA4_14210 | XZL33697.1 | OG0001124 | CP198302.1:3097246–3099843 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXA4_01500 | XZL34189.1 | OG0001228 | CP198302.1:340580–342103 + | L-lactate permease [Clostridium perfringens] |
| crtACSXA4_12915 | XZL33468.1 | OG0001394 | CP198302.1:2841311–2842093 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXA4_00285 | XZL33967.1 | OG0001639 | CP198302.1:69585–70361 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.