Assembly
ASM5226444v1
BioProject PRJNA1294857 · BioSample SAMN50128625
GENOME-RESOLVED EVIDENCE
GCA_052264445.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3262984 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXA6_08300 | XZL35781.1 | OG0000061 | CP198297.1:1746302–1747654 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXA6_14145 | XZL36895.1 | OG0000131 | CP198297.1:3096679–3097632 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXA6_08310 | XZL35783.1 | OG0000212 | CP198297.1:1748088–1748579 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXA6_02105 | XZL37371.1 | OG0000229 | CP198297.1:406970–407818 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXA6_02715 | XZL37464.1 | OG0000234 | CP198297.1:524097–525275 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXA6_08305 | XZL35782.1 | OG0000785 | CP198297.1:1747666–1748085 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXA6_00805 | XZL37142.1 | OG0001124 | CP198297.1:147938–150535 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXA6_13045 | XZL36693.1 | OG0001228 | CP198297.1:2843066–2844589 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXA6_08350 | XZL35791.1 | OG0001328 | CP198297.1:1754645–1755220 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXA6_02085 | XZL37367.1 | OG0001394 | CP198297.1:403061–403843 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXA6_14190 | XZL36904.1 | OG0001639 | CP198297.1:3108737–3109513 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.