Assembly
ASM5226453v1
BioProject PRJNA1294857 · BioSample SAMN50128624
GENOME-RESOLVED EVIDENCE
GCA_052264535.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3473658 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXA5_08395 | XZL38573.1 | OG0000061 | CP198299.1:1772942–1774294 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXA5_15015 | XZL39849.1 | OG0000131 | CP198299.1:3255851–3256804 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXA5_08405 | XZL38575.1 | OG0000212 | CP198299.1:1774728–1775219 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXA5_02065 | XZL40325.1 | OG0000229 | CP198299.1:398713–399561 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXA5_02665 | XZL40418.1 | OG0000234 | CP198299.1:513418–514596 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXA5_08400 | XZL38574.1 | OG0000785 | CP198299.1:1774306–1774725 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXA5_00760 | XZL40094.1 | OG0001124 | CP198299.1:139268–141865 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| rnfAACSXA5_08445 | XZL38583.1 | OG0001328 | CP198299.1:1781285–1781860 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXA5_02045 | XZL40321.1 | OG0001394 | CP198299.1:394805–395587 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXA5_15070 | XZL39860.1 | OG0001639 | CP198299.1:3269762–3270538 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.